CNVision is a Perl script that runs Illumina genotyping data (all chips from 300k to latest Omni) through PennCNV, QuantiSNPv2.3 and GNOSIS (an in-built algorithm). It merges the results and assesses the quality of the raw data. CNVision can also identify de novo CNVs in family-based data using a highly accurate algorithm that considers the possibility of CNVs in either parent based on the raw genotyping data.

The script is optimized to work in a UNIX-based environment; it should work in Windows, however running the PennCNV component gives errors with the newer versions of PennCNV.

CNVision was written to analyze data for the Simons Simplex Collection (SSC) autism data. A fill description of methods are given in the following paper which can be used to reference CNVision:
http://www.ncbi.nlm.nih.gov/pubmed/21658581

Project Samples

Project Activity

See All Activity >

Categories

Bio-Informatics

License

Creative Commons Attribution Non-Commercial License V2.0

Follow CNVision

CNVision Web Site

Other Useful Business Software
RMM Software | Remote Monitoring Platform and Tools Icon
RMM Software | Remote Monitoring Platform and Tools

Best-in-class automation, scalability, and single-pane IT management.

Don’t settle when it comes to managing your clients’ IT infrastructure. Exceed their expectations with ConnectWise RMM, our MSP RMM software that provides proactive tools and NOC services—regardless of device environment. With the number of new vulnerabilities rising each year, smart patching procedures have never been more important. We automatically test and deploy patches when they are viable and restrict patches that are harmful. Get better protection for clients while you spend less time managing endpoints and more time growing your business. It’s tough to locate, afford, and retain quality talent. In fact, 81% of IT leaders say it’s hard to find the recruits they need. Add ConnectWise RMM, NOC services and get the expertise and problem resolution you need to become the advisor your clients demand—without adding headcount.
Rate This Project
Login To Rate This Project

User Ratings

★★★★★
★★★★
★★★
★★
0
1
0
0
0
ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5

User Reviews

  • Documentation is outdated -> Specifically link to formatting of finalreport, and etc is broken.
Read more reviews >

Additional Project Details

Operating Systems

Linux

Intended Audience

Science/Research

User Interface

Console/Terminal

Programming Language

Perl

Related Categories

Perl Bio-Informatics Software

Registered

2012-09-30